Test results for 5.2.4 [failed]

===================================================================== FAILED TEST SUMMARY --------------------------------------------------------------------- Bug #38474 (getAttribute select attribute by order, even when prefixed) (OK to fail with libxml2 < 2.6.2x) [ext/dom/tests/bug38474.phpt] Bug #42082 (NodeList length zero should be empty) [ext/dom/tests/bug42082.phpt] Bug #16069 (ICONV transliteration failure) [ext/iconv/tests/bug16069.phpt] iconv stream filter [ext/iconv/tests/iconv_stream_filter.phpt] ===================================================================== ===================================================================== TEST RESULT SUMMARY --------------------------------------------------------------------- Exts skipped : 57 Exts tested : 22 --------------------------------------------------------------------- Number of tests : 3973 2489 Tests skipped : 1484 ( 37.4%) -------- Tests warned : 0 ( 0.0%) ( 0.0%) Tests failed : 4 ( 0.1%) ( 0.2%) Tests passed : 2485 ( 62.5%) ( 99.8%) --------------------------------------------------------------------- Time taken : 172 seconds ===================================================================== ===================================================================== FAILED TEST SUMMARY --------------------------------------------------------------------- Bug #38474 (getAttribute select attribute by order, even when prefixed) (OK to fail with libxml2 < 2.6.2x) [ext/dom/tests/bug38474.phpt] Bug #42082 (NodeList length zero should be empty) [ext/dom/tests/bug42082.phpt] Bug #16069 (ICONV transliteration failure) [ext/iconv/tests/bug16069.phpt] iconv stream filter [ext/iconv/tests/iconv_stream_filter.phpt] ===================================================================== ================================================================================ /root/php-5.2.4/ext/dom/tests/bug38474.phpt ================================================================================ foo bar foo2 bar baz2 ================================================================================ 004+ bar 005+ 006+ 004- bar2 005- baz 008- baz ================================================================================ ================================================================================ /root/php-5.2.4/ext/dom/tests/bug42082.phpt ================================================================================ Warning: DOMXPath::query(): Invalid or inclomplete context in /root/php-5.2.4/ext/dom/tests/bug42082.php on line 4 bool(false) Notice: Trying to get property of non-object in /root/php-5.2.4/ext/dom/tests/bug42082.php on line 6 NULL Notice: Trying to get property of non-object in /root/php-5.2.4/ext/dom/tests/bug42082.php on line 7 bool(true) bool(true) string(0) "" bool(true) bool(true) bool(false) bool(false) ================================================================================ 001+ Warning: DOMXPath::query(): Invalid or inclomplete context in /root/php-5.2.4/ext/dom/tests/bug42082.php on line 4 002+ bool(false) 003+ 004+ Notice: Trying to get property of non-object in /root/php-5.2.4/ext/dom/tests/bug42082.php on line 6 005+ NULL 006+ 007+ Notice: Trying to get property of non-object in /root/php-5.2.4/ext/dom/tests/bug42082.php on line 7 001- object(DOMNodeList)#%d (0) { 002- } 003- int(0) ================================================================================ ================================================================================ /root/php-5.2.4/ext/iconv/tests/bug16069.phpt ================================================================================ ¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë(¡ë§¥¡ë) ================================================================================ 001+ ¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë(¡ë§¥¡ë) 001- ¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë¥ß¥ê¥Ð¡¼¥ë(¡ë§¥¡ë) ================================================================================ ================================================================================ /root/php-5.2.4/ext/iconv/tests/iconv_stream_filter.phpt ================================================================================ string(20) "1b244224332473244b24" string(10) "41244f1b28" string(2) "42" string(20) "a4b3a4f3a4cba4c1a4cf" string(10) "69636f6e76" string(2) "0a" string(20) "1b244f24332466245824" string(10) "4e24421b28" string(2) "4f" ================================================================================ 007+ string(20) "1b244f24332466245824" 008+ string(10) "4e24421b28" 009+ string(2) "4f" 007- 008- Warning: fread(): iconv stream filter ("ISO-2022-JP"=>"EUC-JP"): invalid multibyte sequence in %s on line %d 009- string(0) "" 010- string(0) "" 011- string(0) "" ================================================================================ ================================================================================ BUILD ENVIRONMENT ================================================================================ OS: Linux - Linux ssh 2.6.9-55.0.6.ELsmp #1 SMP Tue Sep 4 21:05:30 EDT 2007 x86_64 Autoconf: autoconf (GNU Autoconf) 2.59 Written by David J. MacKenzie and Akim Demaille. Copyright (C) 2003 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Bundled Libtool: ltmain.sh (GNU libtool) 1.5.20 (1.1220.2.287 2005/08/31 18:54:15) Copyright (C) 2005 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. System Libtool: ltmain.sh (GNU libtool) 1.5.6 (1.1220.2.95 2004/04/11 05:50:42) Copyright (C) 2003 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Compiler: Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.6/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-java-awt=gtk --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.6 20060404 (Red Hat 3.4.6-8) Bison: bison (GNU Bison) 1.875c Written by Robert Corbett and Richard Stallman. Copyright (C) 2003 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Libraries: libcrypt.so.1 => /lib64/libcrypt.so.1 (0x0000003533900000) librt.so.1 => /lib64/tls/librt.so.1 (0x00000036c6200000) libresolv.so.2 => /lib64/libresolv.so.2 (0x0000003531b00000) libm.so.6 => /lib64/tls/libm.so.6 (0x0000003530d00000) libdl.so.2 => /lib64/libdl.so.2 (0x0000003530f00000) libnsl.so.1 => /lib64/libnsl.so.1 (0x0000003538500000) libz.so.1 => /usr/lib64/libz.so.1 (0x0000003531900000) libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x0000003537000000) libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000003531100000) libc.so.6 => /lib64/tls/libc.so.6 (0x0000003530a00000) /lib64/ld-linux-x86-64.so.2 (0x0000003530600000) User's E-mail: ================================================================================ PHPINFO ================================================================================ phpinfo() PHP Version => 5.2.4 System => Linux ssh 2.6.9-55.0.6.ELsmp #1 SMP Tue Sep 4 21:05:30 EDT 2007 x86_64 Build Date => Sep 26 2007 10:17:11 Configure Command => './configure' '--prefix=/apps/cluster/php' Server API => Command Line Interface Virtual Directory Support => disabled Configuration File (php.ini) Path => /apps/cluster/php/lib Loaded Configuration File => (none) PHP API => 20041225 PHP Extension => 20060613 Zend Extension => 220060519 Debug Build => no Thread Safety => disabled Zend Memory Manager => enabled IPv6 Support => enabled Registered PHP Streams => php, file, data, http, ftp Registered Stream Socket Transports => tcp, udp, unix, udg Registered Stream Filters => string.rot13, string.toupper, string.tolower, string.strip_tags, convert.*, consumed, convert.iconv.* This program makes use of the Zend Scripting Language Engine: Zend Engine v2.2.0, Copyright (c) 1998-2007 Zend Technologies _______________________________________________________________________ Configuration PHP Core Directive => Local Value => Master Value allow_call_time_pass_reference => On => On allow_url_fopen => On => On allow_url_include => Off => Off 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Support => enabled XPointer Support => enabled Schema Support => enabled RelaxNG Support => enabled filter Input Validation and Filtering => enabled Revision => $Revision: 1.52.2.39 $ Directive => Local Value => Master Value filter.default => unsafe_raw => unsafe_raw filter.default_flags => no value => no value hash hash support => enabled Hashing Engines => md2 md4 md5 sha1 sha256 sha384 sha512 ripemd128 ripemd160 ripemd256 ripemd320 whirlpool tiger128,3 tiger160,3 tiger192,3 tiger128,4 tiger160,4 tiger192,4 snefru gost adler32 crc32 crc32b haval128,3 haval160,3 haval192,3 haval224,3 haval256,3 haval128,4 haval160,4 haval192,4 haval224,4 haval256,4 haval128,5 haval160,5 haval192,5 haval224,5 haval256,5 iconv iconv support => enabled iconv implementation => glibc iconv library version => 2.3.4 Directive => Local Value => Master Value iconv.input_encoding => ISO-8859-1 => ISO-8859-1 iconv.internal_encoding => ISO-8859-1 => ISO-8859-1 iconv.output_encoding => ISO-8859-1 => ISO-8859-1 json json support => enabled json version => 1.2.1 libxml libXML support => active libXML Version => 2.6.16 libXML streams => enabled pcre PCRE (Perl Compatible Regular Expressions) Support => enabled PCRE Library Version => 7.2 2007-06-19 Directive => Local Value => Master Value pcre.backtrack_limit => 100000 => 100000 pcre.recursion_limit => 100000 => 100000 PDO PDO support => enabled PDO drivers => sqlite2, sqlite pdo_sqlite PDO Driver for SQLite 3.x => enabled PECL Module version => (bundled) 1.0.1 $Id: pdo_sqlite.c,v 1.10.2.6.2.2 2007/03/23 14:30:00 wez Exp $ SQLite Library => 3.3.17 posix Revision => $Revision: 1.70.2.3.2.16 $ Reflection Reflection => enabled Version => $Id: php_reflection.c,v 1.164.2.33.2.45 2007/08/20 17:01:22 sebastian Exp $ session Session Support => enabled Registered save handlers => files user sqlite Registered serializer handlers => php php_binary Directive => Local Value => Master Value session.auto_start => Off => Off session.bug_compat_42 => On => On 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Interfaces => Countable, OuterIterator, RecursiveIterator, SeekableIterator, SplObserver, SplSubject Classes => AppendIterator, ArrayIterator, ArrayObject, BadFunctionCallException, BadMethodCallException, CachingIterator, DirectoryIterator, DomainException, EmptyIterator, FilterIterator, InfiniteIterator, InvalidArgumentException, IteratorIterator, LengthException, LimitIterator, LogicException, NoRewindIterator, OutOfBoundsException, OutOfRangeException, OverflowException, ParentIterator, RangeException, RecursiveArrayIterator, RecursiveCachingIterator, RecursiveDirectoryIterator, RecursiveFilterIterator, RecursiveIteratorIterator, RecursiveRegexIterator, RegexIterator, RuntimeException, SimpleXMLIterator, SplFileInfo, SplFileObject, SplObjectStorage, SplTempFileObject, UnderflowException, UnexpectedValueException SQLite SQLite support => enabled PECL Module version => 2.0-dev $Id: sqlite.c,v 1.166.2.13.2.9 2007/05/19 17:58:22 iliaa Exp $ SQLite Library => 2.8.17 SQLite Encoding => iso8859 Directive => Local Value => Master Value sqlite.assoc_case => 0 => 0 standard Regex Library => Bundled library enabled Dynamic Library Support => enabled Path to sendmail => /usr/sbin/sendmail -t -i Directive => Local Value => Master Value assert.active => 1 => 1 assert.bail => 0 => 0 assert.callback => no value => no value assert.quiet_eval => 0 => 0 assert.warning => 1 => 1 auto_detect_line_endings => 0 => 0 default_socket_timeout => 60 => 60 safe_mode_allowed_env_vars => PHP_ => PHP_ safe_mode_protected_env_vars => LD_LIBRARY_PATH => LD_LIBRARY_PATH url_rewriter.tags => a=href,area=href,frame=src,form=,fieldset= => a=href,area=href,frame=src,form=,fieldset= user_agent => no value => no value tokenizer Tokenizer Support => enabled xml XML Support => active XML Namespace Support => active libxml2 Version => 2.6.16 xmlreader XMLReader => enabled xmlwriter XMLWriter => enabled Additional Modules Module Name Environment Variable => Value MANPATH => /usr/kerberos/man:/usr/local/share/man:/usr/share/man/en:/usr/share/man:/usr/X11R6/man:/apps/technic/java/man:/usr/local/man:/apps/sequence/staden/man:/apps/sequence/staden/man COILSDIR => /apps/sequence/coils HOSTNAME => ssh TEST_PHP_SRCDIR => /root/php-5.2.4 MALLOC_CHECK_ => 0 SHELL => /bin/sh TERM => vt100 MAKEFLAGS => HISTSIZE => 1000 SSH_CLIENT => deleted PERL5LIB => 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ral/perl/ensembl-compara/modules:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/homes/bbu-tomiad:/apps/general/perl/libs:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/bioperl-live:/root:/apps/general/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/modules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/bioperl-live:/root:/apps/general/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/modules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/perl5/5.8.8-multi:/root:/apps/general/perl/bioperl-live:/root:/apps/general/p! erl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/modules:/ root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8 GHI_DIR => /apps/genetics/bin SGE_CELL => default SGE_ARCH => lx24-amd64 TK_LIBRARY => /apps/sequence/staden/lib/tk MPICH_PROCESS_GROUP => no QTDIR => /usr/lib64/qt-3.3 MEME_DIRECTORY => /apps/sequence/meme STADTABL => /apps/sequence/staden/tables WEEDER_DATA => /apps/sequence/weeder/FreqFiles LAGAN_DIR => /apps/sequence/lagan SSH_TTY => deleted USER => root LS_COLORS => no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tz=01;31:*.rpm=01;31:*.cpio=01;31:*.jpg=01;35:*.gif=01;35:*.bmp=01;35:*.xbm=01;35:*.xpm=01;35:*.png=01;35:*.tif=01;35: LD_LIBRARY_PATH => /opt/gridengine/lib/lx24-amd64:/apps/sequence/staden/lib/linux-binaries SUDO_USER => bbu-tomiad GENETICS_ROOT => /apps/genetics SEQBIN => /apps/sequence SUDO_UID => 17402 GH_DIR => /apps/genetics/bin TCL_LIBRARY => /apps/sequence/staden/lib/tcl SSH_AUTH_SOCK => deleted KDEDIR => /usr GTAGDB => GTAGDB:/root/GTAGDB:/apps/sequence/staden/tables/GTAGDB MAKELEVEL => 1 PLPLOT_LIB => /apps/sequence/emboss/lib MFLAGS => BLIMPS_DIR => /apps/sequence/blimps SIBS_DIR => /apps/genetics/bin PATH => /opt/gridengine/bin/lx24-amd64:/apps/sequence/staden/linux-bin:/usr/kerberos/sbin:/opt/gridengine/bin/lx24-amd64:/apps/sequence/staden/linux-bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/opt/Navisphere/bin:/etc/opt/emcpower/EMCpower.LINUX-5.0.0/bin/cmds:/usr/lpp/mmfs/bin:/opt/iozone/bin:/opt/gridengine/bin/lx24-amd64/:/apps/cluster:/apps/technic/java/bin:/apps/technic/eclipse::/apps/genetics/bin:/apps/genetics/bin/analyze:/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/apps/sequence/bin:/apps/sequence/emboss/bin:/apps/sequence/blast/bin:/apps/sequence/meme/bin:/apps/sequence/alignace/:/! apps/sequence/avid:/apps/sequence/ahab:/apps/sequence/lagan:/apps/sequence/INCLUSive:/apps/sequence/mavid/bin:/apps/sequence/RepeatMasker:/apps/sequence/mrbayes:/apps/sequence/phylip:/apps/sequence/t-coffee/bin:/apps/sequence/sim4:/apps/sequence/readseq:/apps/sequence/clustalw:/apps/sequence/weeder:/apps/sequence/wise/src/bin/:/apps/sequence/phrap:/apps/sequence/huang:/apps/sequence/mpd:/apps/sequence/hmmer:/apps/sequence/blastz:/apps/sequence/patser:/apps/sequence/phylocon:/apps/sequence/phyme:/apps/sequence/blimps:/apps/sequence/phyloquart:/apps/sequence/primer3:/apps/sequence/muscle:/apps/sequence/mfold/bin:/apps/sequence/HMMTiling:/homes/bbu-tomiad:/apps/statistics/R:/homes/bbu-tomiad:/apps/statistics/R/bin:/homes/bbu-tomiad:/apps/statistics:/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/opt/Navisphere/bin:/etc/opt/emcpower/EMCpower.LINUX-5.0.0/bin/cmds:/usr/lpp/mmfs/bin:/opt/iozone/bin:/opt/gridengine/bin/lx24-amd64/:/apps/cluster:/apps/technic/java/bin:! /apps/technic/eclipse::/apps/genetics/bin:/apps/genetics/bin/analyze:/ root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/apps/sequence/bin:/apps/sequence/emboss/bin:/apps/sequence/blast/bin:/apps/sequence/meme/bin:/apps/sequence/alignace/:/apps/sequence/avid:/apps/sequence/ahab:/apps/sequence/lagan:/apps/sequence/INCLUSive:/apps/sequence/mavid/bin:/apps/sequence/RepeatMasker:/apps/sequence/mrbayes:/apps/sequence/phylip:/apps/sequence/t-coffee/bin:/apps/sequence/sim4:/apps/sequence/readseq:/apps/sequence/clustalw:/apps/sequence/weeder:/apps/sequence/wise/src/bin/:/apps/sequence/phrap:/apps/sequence/huang:/apps/sequence/mpd:/apps/sequence/hmmer:/apps/sequence/blastz:/apps/sequence/patser:/apps/sequence/phylocon:/apps/sequenc! e/phyme:/apps/sequence/blimps:/apps/sequence/phyloquart:/apps/sequence/primer3:/apps/sequence/muscle:/apps/sequence/mfold/bin:/apps/sequence/HMMTiling:/root:/apps/statistics/R:/root:/apps/statistics/R/bin:/root:/apps/statistics MAIL => /var/spool/mail/bbu-tomiad _ => /root/php-5.2.4/sapi/cli/php PROSITE => /homes/seqdbs/prosite PWD => /root/php-5.2.4 INPUTRC => /etc/inputrc STADENROOT => /apps/sequence/staden SGE_EXECD_PORT => 537 LANG => en_US.UTF-8 TEST_PHP_EXECUTABLE => /root/php-5.2.4/sapi/cli/php SGE_QMASTER_PORT => 536 SGE_ROOT => /opt/gridengine STADENROOT_1_5 => /apps/sequence/staden MACHINE => linux BLASTDB => /homes/seqdbs KRB5CCNAME => FILE:/tmp/krb5cc_17402_CYOCzi SSH_ASKPASS => /usr/libexec/openssh/gnome-ssh-askpass SUDO_COMMAND => /bin/su HOME => /root SHLVL => 4 EMBOSS_DATA => /apps/sequence/emboss/share/EMBOSS/data LOGNAME => root MATLAB => /apps/matlab SSH_CONNECTION => deleted LESSOPEN => |/usr/bin/lesspipe.sh %s MFOLDDAT => /apps/sequence/mfold/dat BLASTMAT => /apps/sequence/blast/data R_HOME => /apps/statistics/R SUDO_GID => 11244 CC => gcc STADLIB => /apps/sequence/staden/lib GENETICS_BIN => /apps/genetics/bin G_BROKEN_FILENAMES => 1 HOMOZ_DIR => /apps/genetics/bin PHP Variables Variable => Value _SERVER["MANPATH"] => /usr/kerberos/man:/usr/local/share/man:/usr/share/man/en:/usr/share/man:/usr/X11R6/man:/apps/technic/java/man:/usr/local/man:/apps/sequence/staden/man:/apps/sequence/staden/man _SERVER["COILSDIR"] => /apps/sequence/coils _SERVER["HOSTNAME"] => ssh _SERVER["TEST_PHP_SRCDIR"] => /root/php-5.2.4 _SERVER["MALLOC_CHECK_"] => 0 _SERVER["SHELL"] => /bin/sh _SERVER["TERM"] => vt100 _SERVER["MAKEFLAGS"] => _SERVER["HISTSIZE"] => 1000 _SERVER["SSH_CLIENT"] => deleted _SERVER["PERL5LIB"] => :/homes/bbu-tomiad:/apps/general/perl/bioperl-live:/homes/bbu-tomiad:/apps/general/perl/ensembl/modules:/homes/bbu-tomiad:/apps/general/perl/ensembl-compara/modules:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/homes/bbu-tomiad:/apps/general/perl/libs:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8:/homes/bbu-tomiad:/apps/general/perl/bioperl-live:/homes/bbu-tomiad:/apps/general/perl/ensembl/modules:/homes/bbu-tomiad:/apps/general/perl/ensembl-compara/modules:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/homes/bbu-tomiad:/apps/general/perl/libs:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8-multi:/homes/bbu-tomiad:/apps/general/perl/bioperl-live:/homes/bbu-tomiad:/apps/general/perl/ensembl/modules:/homes/bbu-tomiad! :/apps/general/perl/ensembl-compara/modules:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/homes/bbu-tomiad:/apps/general/perl/libs:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/bioperl-live:/root:/apps/general/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/modules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/bioperl-live:/root:/apps/general/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/modules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/perl5/5.8.8-multi:/root:/apps/general/perl/bioperl-live:/root:/app! s/general/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compar a/modules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8 _SERVER["GHI_DIR"] => /apps/genetics/bin _SERVER["SGE_CELL"] => default _SERVER["SGE_ARCH"] => lx24-amd64 _SERVER["TK_LIBRARY"] => /apps/sequence/staden/lib/tk _SERVER["MPICH_PROCESS_GROUP"] => no _SERVER["QTDIR"] => /usr/lib64/qt-3.3 _SERVER["MEME_DIRECTORY"] => /apps/sequence/meme _SERVER["STADTABL"] => /apps/sequence/staden/tables _SERVER["WEEDER_DATA"] => /apps/sequence/weeder/FreqFiles _SERVER["LAGAN_DIR"] => /apps/sequence/lagan _SERVER["SSH_TTY"] => deleted _SERVER["USER"] => root _SERVER["LS_COLORS"] => no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tz=01;31:*.rpm=01;31:*.cpio=01;31:*.jpg=01;35:*.gif=01;35:*.bmp=01;35:*.xbm=01;35:*.xpm=01;35:*.png=01;35:*.tif=01;35: _SERVER["LD_LIBRARY_PATH"] => /opt/gridengine/lib/lx24-amd64:/apps/sequence/staden/lib/linux-binaries _SERVER["SUDO_USER"] => bbu-tomiad _SERVER["GENETICS_ROOT"] => /apps/genetics _SERVER["SEQBIN"] => /apps/sequence _SERVER["SUDO_UID"] => 17402 _SERVER["GH_DIR"] => /apps/genetics/bin _SERVER["TCL_LIBRARY"] => /apps/sequence/staden/lib/tcl _SERVER["SSH_AUTH_SOCK"] => deleted _SERVER["KDEDIR"] => /usr _SERVER["GTAGDB"] => GTAGDB:/root/GTAGDB:/apps/sequence/staden/tables/GTAGDB _SERVER["MAKELEVEL"] => 1 _SERVER["PLPLOT_LIB"] => /apps/sequence/emboss/lib _SERVER["MFLAGS"] => _SERVER["BLIMPS_DIR"] => /apps/sequence/blimps _SERVER["SIBS_DIR"] => /apps/genetics/bin _SERVER["PATH"] => /opt/gridengine/bin/lx24-amd64:/apps/sequence/staden/linux-bin:/usr/kerberos/sbin:/opt/gridengine/bin/lx24-amd64:/apps/sequence/staden/linux-bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/opt/Navisphere/bin:/etc/opt/emcpower/EMCpower.LINUX-5.0.0/bin/cmds:/usr/lpp/mmfs/bin:/opt/iozone/bin:/opt/gridengine/bin/lx24-amd64/:/apps/cluster:/apps/technic/java/bin:/apps/technic/eclipse::/apps/genetics/bin:/apps/genetics/bin/analyze:/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/apps/sequence/bin:/apps/sequence/emboss/bin:/apps/sequence/blast/bin:/apps/sequence/meme/bin:/apps/sequence/! alignace/:/apps/sequence/avid:/apps/sequence/ahab:/apps/sequence/lagan:/apps/sequence/INCLUSive:/apps/sequence/mavid/bin:/apps/sequence/RepeatMasker:/apps/sequence/mrbayes:/apps/sequence/phylip:/apps/sequence/t-coffee/bin:/apps/sequence/sim4:/apps/sequence/readseq:/apps/sequence/clustalw:/apps/sequence/weeder:/apps/sequence/wise/src/bin/:/apps/sequence/phrap:/apps/sequence/huang:/apps/sequence/mpd:/apps/sequence/hmmer:/apps/sequence/blastz:/apps/sequence/patser:/apps/sequence/phylocon:/apps/sequence/phyme:/apps/sequence/blimps:/apps/sequence/phyloquart:/apps/sequence/primer3:/apps/sequence/muscle:/apps/sequence/mfold/bin:/apps/sequence/HMMTiling:/homes/bbu-tomiad:/apps/statistics/R:/homes/bbu-tomiad:/apps/statistics/R/bin:/homes/bbu-tomiad:/apps/statistics:/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/opt/Navisphere/bin:/etc/opt/emcpower/EMCpower.LINUX-5.0.0/bin/cmds:/usr/lpp/mmfs/bin:/opt/iozone/bin:/opt/gridengine/bin/lx24-amd64/:/apps/cluster:/apps/techni! c/java/bin:/apps/technic/eclipse::/apps/genetics/bin:/apps/genetics/bi n/analyze:/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/apps/sequence/bin:/apps/sequence/emboss/bin:/apps/sequence/blast/bin:/apps/sequence/meme/bin:/apps/sequence/alignace/:/apps/sequence/avid:/apps/sequence/ahab:/apps/sequence/lagan:/apps/sequence/INCLUSive:/apps/sequence/mavid/bin:/apps/sequence/RepeatMasker:/apps/sequence/mrbayes:/apps/sequence/phylip:/apps/sequence/t-coffee/bin:/apps/sequence/sim4:/apps/sequence/readseq:/apps/sequence/clustalw:/apps/sequence/weeder:/apps/sequence/wise/src/bin/:/apps/sequence/phrap:/apps/sequence/huang:/apps/sequence/mpd:/apps/sequence/hmmer:/apps/sequence/blastz:/apps/sequence/patser:/apps/sequence/phylocon:/a! pps/sequence/phyme:/apps/sequence/blimps:/apps/sequence/phyloquart:/apps/sequence/primer3:/apps/sequence/muscle:/apps/sequence/mfold/bin:/apps/sequence/HMMTiling:/root:/apps/statistics/R:/root:/apps/statistics/R/bin:/root:/apps/statistics _SERVER["MAIL"] => /var/spool/mail/bbu-tomiad _SERVER["_"] => /root/php-5.2.4/sapi/cli/php _SERVER["PROSITE"] => /homes/seqdbs/prosite _SERVER["PWD"] => /root/php-5.2.4 _SERVER["INPUTRC"] => /etc/inputrc _SERVER["STADENROOT"] => /apps/sequence/staden _SERVER["SGE_EXECD_PORT"] => 537 _SERVER["LANG"] => en_US.UTF-8 _SERVER["TEST_PHP_EXECUTABLE"] => /root/php-5.2.4/sapi/cli/php _SERVER["SGE_QMASTER_PORT"] => 536 _SERVER["SGE_ROOT"] => /opt/gridengine _SERVER["STADENROOT_1_5"] => /apps/sequence/staden _SERVER["MACHINE"] => linux _SERVER["BLASTDB"] => /homes/seqdbs _SERVER["KRB5CCNAME"] => FILE:/tmp/krb5cc_17402_CYOCzi _SERVER["SSH_ASKPASS"] => /usr/libexec/openssh/gnome-ssh-askpass _SERVER["SUDO_COMMAND"] => /bin/su _SERVER["HOME"] => /root _SERVER["SHLVL"] => 4 _SERVER["EMBOSS_DATA"] => /apps/sequence/emboss/share/EMBOSS/data _SERVER["LOGNAME"] => root _SERVER["MATLAB"] => /apps/matlab _SERVER["SSH_CONNECTION"] => deleted _SERVER["LESSOPEN"] => |/usr/bin/lesspipe.sh %s _SERVER["MFOLDDAT"] => /apps/sequence/mfold/dat _SERVER["BLASTMAT"] => /apps/sequence/blast/data _SERVER["R_HOME"] => /apps/statistics/R _SERVER["SUDO_GID"] => 11244 _SERVER["CC"] => gcc _SERVER["STADLIB"] => /apps/sequence/staden/lib _SERVER["GENETICS_BIN"] => /apps/genetics/bin _SERVER["G_BROKEN_FILENAMES"] => 1 _SERVER["HOMOZ_DIR"] => /apps/genetics/bin _SERVER["PHP_SELF"] => _SERVER["SCRIPT_NAME"] => _SERVER["SCRIPT_FILENAME"] => _SERVER["PATH_TRANSLATED"] => _SERVER["DOCUMENT_ROOT"] => _SERVER["REQUEST_TIME"] => 1190791325 _SERVER["argv"] => Array ( ) _SERVER["argc"] => 0 _ENV["MANPATH"] => /usr/kerberos/man:/usr/local/share/man:/usr/share/man/en:/usr/share/man:/usr/X11R6/man:/apps/technic/java/man:/usr/local/man:/apps/sequence/staden/man:/apps/sequence/staden/man _ENV["COILSDIR"] => /apps/sequence/coils _ENV["HOSTNAME"] => ssh _ENV["TEST_PHP_SRCDIR"] => /root/php-5.2.4 _ENV["MALLOC_CHECK_"] => 0 _ENV["SHELL"] => /bin/sh _ENV["TERM"] => vt100 _ENV["MAKEFLAGS"] => _ENV["HISTSIZE"] => 1000 _ENV["SSH_CLIENT"] => deleted _ENV["PERL5LIB"] => :/homes/bbu-tomiad:/apps/general/perl/bioperl-live:/homes/bbu-tomiad:/apps/general/perl/ensembl/modules:/homes/bbu-tomiad:/apps/general/perl/ensembl-compara/modules:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/homes/bbu-tomiad:/apps/general/perl/libs:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8:/homes/bbu-tomiad:/apps/general/perl/bioperl-live:/homes/bbu-tomiad:/apps/general/perl/ensembl/modules:/homes/bbu-tomiad:/apps/general/perl/ensembl-compara/modules:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/homes/bbu-tomiad:/apps/general/perl/libs:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8-multi:/homes/bbu-tomiad:/apps/general/perl/bioperl-live:/homes/bbu-tomiad:/apps/general/perl/ensembl/modules:/homes/bbu-tomiad:/a! pps/general/perl/ensembl-compara/modules:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi:/homes/bbu-tomiad:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/homes/bbu-tomiad:/apps/general/perl/libs:/homes/bbu-tomiad:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/bioperl-live:/root:/apps/general/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/modules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/bioperl-live:/root:/apps/general/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/modules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8:/root:/apps/general/perl/perl5/5.8.8-multi:/root:/apps/general/perl/bioperl-live:/root:/apps/g! eneral/perl/ensembl/modules:/root:/apps/general/perl/ensembl-compara/m odules:/root:/apps/general/perl/libs/x86_64-linux-thread-multi:/root:/apps/general/perl/libs/x86_64-linux-thread-multi.bak:/root:/apps/general/perl/libs:/root:/apps/general/perl/perl5/5.8.8 _ENV["GHI_DIR"] => /apps/genetics/bin _ENV["SGE_CELL"] => default _ENV["SGE_ARCH"] => lx24-amd64 _ENV["TK_LIBRARY"] => /apps/sequence/staden/lib/tk _ENV["MPICH_PROCESS_GROUP"] => no _ENV["QTDIR"] => /usr/lib64/qt-3.3 _ENV["MEME_DIRECTORY"] => /apps/sequence/meme _ENV["STADTABL"] => /apps/sequence/staden/tables _ENV["WEEDER_DATA"] => /apps/sequence/weeder/FreqFiles _ENV["LAGAN_DIR"] => /apps/sequence/lagan _ENV["SSH_TTY"] => deleted _ENV["USER"] => root _ENV["LS_COLORS"] => no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=01;32:*.cmd=01;32:*.exe=01;32:*.com=01;32:*.btm=01;32:*.bat=01;32:*.sh=01;32:*.csh=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tz=01;31:*.rpm=01;31:*.cpio=01;31:*.jpg=01;35:*.gif=01;35:*.bmp=01;35:*.xbm=01;35:*.xpm=01;35:*.png=01;35:*.tif=01;35: _ENV["LD_LIBRARY_PATH"] => /opt/gridengine/lib/lx24-amd64:/apps/sequence/staden/lib/linux-binaries _ENV["SUDO_USER"] => bbu-tomiad _ENV["GENETICS_ROOT"] => /apps/genetics _ENV["SEQBIN"] => /apps/sequence _ENV["SUDO_UID"] => 17402 _ENV["GH_DIR"] => /apps/genetics/bin _ENV["TCL_LIBRARY"] => /apps/sequence/staden/lib/tcl _ENV["SSH_AUTH_SOCK"] => deleted _ENV["KDEDIR"] => /usr _ENV["GTAGDB"] => GTAGDB:/root/GTAGDB:/apps/sequence/staden/tables/GTAGDB _ENV["MAKELEVEL"] => 1 _ENV["PLPLOT_LIB"] => /apps/sequence/emboss/lib _ENV["MFLAGS"] => _ENV["BLIMPS_DIR"] => /apps/sequence/blimps _ENV["SIBS_DIR"] => /apps/genetics/bin _ENV["PATH"] => /opt/gridengine/bin/lx24-amd64:/apps/sequence/staden/linux-bin:/usr/kerberos/sbin:/opt/gridengine/bin/lx24-amd64:/apps/sequence/staden/linux-bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/opt/Navisphere/bin:/etc/opt/emcpower/EMCpower.LINUX-5.0.0/bin/cmds:/usr/lpp/mmfs/bin:/opt/iozone/bin:/opt/gridengine/bin/lx24-amd64/:/apps/cluster:/apps/technic/java/bin:/apps/technic/eclipse::/apps/genetics/bin:/apps/genetics/bin/analyze:/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/apps/sequence/bin:/apps/sequence/emboss/bin:/apps/sequence/blast/bin:/apps/sequence/meme/bin:/apps/sequence/ali! gnace/:/apps/sequence/avid:/apps/sequence/ahab:/apps/sequence/lagan:/apps/sequence/INCLUSive:/apps/sequence/mavid/bin:/apps/sequence/RepeatMasker:/apps/sequence/mrbayes:/apps/sequence/phylip:/apps/sequence/t-coffee/bin:/apps/sequence/sim4:/apps/sequence/readseq:/apps/sequence/clustalw:/apps/sequence/weeder:/apps/sequence/wise/src/bin/:/apps/sequence/phrap:/apps/sequence/huang:/apps/sequence/mpd:/apps/sequence/hmmer:/apps/sequence/blastz:/apps/sequence/patser:/apps/sequence/phylocon:/apps/sequence/phyme:/apps/sequence/blimps:/apps/sequence/phyloquart:/apps/sequence/primer3:/apps/sequence/muscle:/apps/sequence/mfold/bin:/apps/sequence/HMMTiling:/homes/bbu-tomiad:/apps/statistics/R:/homes/bbu-tomiad:/apps/statistics/R/bin:/homes/bbu-tomiad:/apps/statistics:/homes/bbu-tomiad/bin:/state/partition1/apps/mono-1.1.14/bin:/opt/Navisphere/bin:/etc/opt/emcpower/EMCpower.LINUX-5.0.0/bin/cmds:/usr/lpp/mmfs/bin:/opt/iozone/bin:/opt/gridengine/bin/lx24-amd64/:/apps/cluster:/apps/technic/j! ava/bin:/apps/technic/eclipse::/apps/genetics/bin:/apps/genetics/bin/a nalyze:/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/root/bin:/state/partition1/apps/mono-1.1.14/bin:/share/apps/mono-1.1.14/bin:/share/apps/:/apps/general/:/apps/general/perl/::/apps/sequence/bin:/apps/sequence/emboss/bin:/apps/sequence/blast/bin:/apps/sequence/meme/bin:/apps/sequence/alignace/:/apps/sequence/avid:/apps/sequence/ahab:/apps/sequence/lagan:/apps/sequence/INCLUSive:/apps/sequence/mavid/bin:/apps/sequence/RepeatMasker:/apps/sequence/mrbayes:/apps/sequence/phylip:/apps/sequence/t-coffee/bin:/apps/sequence/sim4:/apps/sequence/readseq:/apps/sequence/clustalw:/apps/sequence/weeder:/apps/sequence/wise/src/bin/:/apps/sequence/phrap:/apps/sequence/huang:/apps/sequence/mpd:/apps/sequence/hmmer:/apps/sequence/blastz:/apps/sequence/patser:/apps/sequence/phylocon:/apps! /sequence/phyme:/apps/sequence/blimps:/apps/sequence/phyloquart:/apps/sequence/primer3:/apps/sequence/muscle:/apps/sequence/mfold/bin:/apps/sequence/HMMTiling:/root:/apps/statistics/R:/root:/apps/statistics/R/bin:/root:/apps/statistics _ENV["MAIL"] => /var/spool/mail/bbu-tomiad _ENV["_"] => /root/php-5.2.4/sapi/cli/php _ENV["PROSITE"] => /homes/seqdbs/prosite _ENV["PWD"] => /root/php-5.2.4 _ENV["INPUTRC"] => /etc/inputrc _ENV["STADENROOT"] => /apps/sequence/staden _ENV["SGE_EXECD_PORT"] => 537 _ENV["LANG"] => en_US.UTF-8 _ENV["TEST_PHP_EXECUTABLE"] => /root/php-5.2.4/sapi/cli/php _ENV["SGE_QMASTER_PORT"] => 536 _ENV["SGE_ROOT"] => /opt/gridengine _ENV["STADENROOT_1_5"] => /apps/sequence/staden _ENV["MACHINE"] => linux _ENV["BLASTDB"] => /homes/seqdbs _ENV["KRB5CCNAME"] => FILE:/tmp/krb5cc_17402_CYOCzi _ENV["SSH_ASKPASS"] => /usr/libexec/openssh/gnome-ssh-askpass _ENV["SUDO_COMMAND"] => /bin/su _ENV["HOME"] => /root _ENV["SHLVL"] => 4 _ENV["EMBOSS_DATA"] => /apps/sequence/emboss/share/EMBOSS/data _ENV["LOGNAME"] => root _ENV["MATLAB"] => /apps/matlab _ENV["SSH_CONNECTION"] => deleted _ENV["LESSOPEN"] => |/usr/bin/lesspipe.sh %s _ENV["MFOLDDAT"] => /apps/sequence/mfold/dat _ENV["BLASTMAT"] => /apps/sequence/blast/data _ENV["R_HOME"] => /apps/statistics/R _ENV["SUDO_GID"] => 11244 _ENV["CC"] => gcc _ENV["STADLIB"] => /apps/sequence/staden/lib _ENV["GENETICS_BIN"] => /apps/genetics/bin _ENV["G_BROKEN_FILENAMES"] => 1 _ENV["HOMOZ_DIR"] => /apps/genetics/bin PHP License This program is free software; you can redistribute it and/or modify it under the terms of the PHP License as published by the PHP Group and included in the distribution in the file: LICENSE This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. If you did not receive a copy of the PHP license, or have any questions about PHP licensing, please contact license@php.net.